It looks like you're using an Ad Blocker.
Please white-list or disable AboveTopSecret.com in your ad-blocking tool.
Thank you.
Some features of ATS will be disabled while you continue to use an ad-blocker.
ftp.dna.affrc.go.jp/.../Human_immunodeficiency_virus_type_1.vrl
>HIU81835\U81835\1..318\318\g2198857\Human immunodeficiency virus type 2\HIV-2 isolate 7924A from Senegal, Vpr protein (vpr1) gene, completecds./gene="vpr1"/codon_start=1/product="Vpr protein"/db_xref="PID:g2198857" 1 2 0 0 8 2 2 4 0 2 1 1 2 0 0 0 0 0 3 3 0 3 3 0 3 3 2 2 0 2 4 5 2 0 1 0 0 1 0 1 0 3 3 1 2 2 5 6 1 2 0 2 0 1 2 1 3 3 2 2 1 1 0 0 >HIV2BEN#1\M30502\1103..2668\1566\g325648\Human immunodeficiency virus type 2\Human immunodeficiency virus type 2 (HIV-2), complete proviralgenome./codon_start=1/db_xref="PID:g325648" 2 1 2 0 22 9 9 6 9 2 11 10 3 1 2 2 7 2 10 5 3 5 24 8 4 7 29 6 4 3 16 11 12 3 10 5 10 2 23 16 10 13 16 19 8 3 20 20 11 8 6 6 9 4 5 5 7 7 7 12 9 0 1 0 >HIV2BEN#2\M30502\2863..5754\2892\g1332356\Human immunodeficiency virus type 2\Human immunodeficiency virus type 2 (HIV-2), complete proviralgenome./gene="pol"/codon_start=1/product="pol polyprotein"/db_xref="PID:g1332356" 0 0 2 0 30 15 28 6 19 2 18 6 14 3 0 4 4 8 29 14 1 8 32 9 1 12 36 10 2 3 38 15 9 7 31 16 10 8 55 25 16 27 31 34 10 13 56 22 16 20 11 15 6 7 10 17 40 19 16 23 24 0 1 0 >HIV2BEN#3\M30502\5423..6070\648\g325649\Human immunodeficiency virus type 2\Human immunodeficiency virus type 2 (HIV-2), complete proviralgenome./codon_start=1/db_xref="PID:g325649" 1 1 0 0 13 5 7 1 2 4 2 2 1 2 0 3 3 2 4 4 1 2 7 4 1 0 8 5 0 3 4 2 2 3 8 3 5 2 8 6 3 1 5 5 2 8 7 6 7 1 3 5 4 1 3 2 5 2 0 2 12 0 0 1 >HIV2BEN#4\M30502\5898..6239\342\g325650\Human immunodeficiency virus type 2\Human immunodeficiency virus type 2 (HIV-2), complete proviralgenome./codon_start=1/db_xref="PID:g325650" 1 0 1 0 4 4 3 1 1 0 1 2 1 1 0 0 1 1 3 2 0 1 2 4 1 4 2 2 0 1 5 1 3 1 1 1 2 0 1 2 3 0 4 1 0 3 6 7 3 1 1 3 3 0 3 1 2 0 2 4 5 1 0 0
README file for rgadb of RiceGAAS [2002.11.21]
-----------------------------------------------------------------------------
RiceGAAS (Rice Genome Automated Annotation System) collects the rice genome
entries in GenBank.
Please see the following URLs about RiceGAAS.
RiceGAAS collects the rice genome entries from the daily-update in GenBank
database. The collection rules are as follows;
SOURCE = "oryza sativa"
and
9999bp < [sequence size] < 1Mbp
not
DIVISION= "GSS" or "STS"
Each entry from GenBank is categorized into the anchored chromosome, or
"unknown" if it dose not have any chromosomal information.
Two data set as shown below are made every week.
GenBank files
FASTA files
- FTP files
+-- 20020918 .. data directory (made at 2002-09-18)
+-- yyyymmdd .. data directory (made at yyyy-mm-dd)
+-- README .. this document
+-- current .. link to the latest data directory
Data directories in the ftp file above have GenBank files and FASTA files
containing the following files below.
- GenBank files contain the following files.
RiceGAAS.GenBank.chr01.tar.gz .. chromosome 1 genbank files
RiceGAAS.GenBank.chr02.tar.gz .. chromosome 2 genbank files
RiceGAAS.GenBank.chr03.tar.gz .. chromosome 3 genbank files
RiceGAAS.GenBank.chr04.tar.gz .. chromosome 4 genbank files
RiceGAAS.GenBank.chr05.tar.gz .. chromosome 5 genbank files
RiceGAAS.GenBank.chr06.tar.gz .. chromosome 6 genbank files
RiceGAAS.GenBank.chr07.tar.gz .. chromosome 7 genbank files
RiceGAAS.GenBank.chr08.tar.gz .. chromosome 8 genbank files
RiceGAAS.GenBank.chr09.tar.gz .. chromosome 9 genbank files
RiceGAAS.GenBank.chr10.tar.gz .. chromosome 10 genbank files
RiceGAAS.GenBank.chr11.tar.gz .. chromosome 11 genbank files
RiceGAAS.GenBank.chr12.tar.gz .. chromosome 12 genbank files
RiceGAAS.GenBank.unknown.tar.gz .. unknown genbank files
What is GenBank?
GenBank® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2008 Jan;36(Database issue)25-30). There are approximately 106,533,156,756 bases in 108,431,692 sequence records in the traditional GenBank divisions and 148,165,117,763 bases in 48,443,067 sequence records in the WGS division as of August 2009.
The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at NCBI. These three organizations exchange data on a daily basis.
An example of a GenBank record may be viewed