There is more than one type of plasma

A 'plasma' is basically ionised gas, it doesnt even need to be superheated in a lot of cases. Plasma is
created by stripping away the outershell of electrons, usually through heating the gas to extreme temperatures (10,000 degree c kind of
temperatures).
The plasma surrounding the shuttle in its descent causes disruption of electromagnetic waves such as communications. Plasma stealth works on the same
principle except it uses a precisely created low temperature gas plasma (in most cases) which only interferes with certain types of electro magnetic
waves.
So in short, yes the shuttle (and all spacecraft) is surrounded by plasma on descent, but its a non controllable form of plasma. The plasma in
stealth plasma is created to a precise specification and thus is controlable.