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A military police spokesman told Reuters news agency the two main international terminals, 1 and 2, had been evacuated.
Police were investigating the threat, he said. No flights have been affected by the evacuation so far, reports the BBC's Anna Holligan in The Hague.
Schiphol is one of Europe's busiest airports.
Some reports say the evacuation was sparked by a man claiming to have a bomb in an airport toilet.