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Mass funerals
In Islamabad, Qazi Hussain Ahmed, an opposition political leader, also blamed the US for the attack and said claims that the madrasa was a terrorist training centre were "rubbish".
Thirty children were among the dead, he claimed.
"It was an American plane behind the attack and Pakistan is taking responsibility because they know there would be a civil war if the American responsibility was known," Ahmed, leader of a six-party religious alliance opposed to Musharraf, said.
Pakistanis rally after air raid on school
Qazi Hussain Ahmed, a Pakistani political leader, said he would lead a convoy of cars from the northwestern city of Peshawar to Khar and Chingai in protest on Tuesday.
"They killed 80 teenagers who were students of the Quran," Ahmed said. "This is a very cruel joint-activity [between the US and Musharraf governments]."
Sahibzada Haroon, an MP for the Jamaat Islami party, who lives nearby, said he heard two large explosions "so powerful they shook the earth and rattled our doors and windows" early Monday morning. Fifteen minutes later Pakistani army helicopters arrived, fired a handful of rockets and left.
"Those were small thuds - nothing in comparison to the big explosions that preceded them minutes earlier," Mr Haroon told Dawn newspaper. "I have no doubt in my mind that it was done by the Americans and we are now making a futile attempt to cover it up."
Lying in a hospital bed in nearby Peshawar, Abu Bakar, one of just three seminarians to survive the strike, insisted the madrasa was engaged in education and not terrorism. "We had come to learn Allah's religion," said the 22-year-old, whose legs were broken by falling rubble.